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August 2022; 8 (4) ReviewOpen Access

Integrating Genetic Structural Variations and Whole-Genome Sequencing Into Clinical Neurology

View ORCID ProfileXin Lin, Yuanhao Yang, Phillip E. Melton, Vikrant Singh, View ORCID ProfileSteve Simpson-Yap, Kathryn P. Burdon, View ORCID ProfileBruce V. Taylor, View ORCID ProfileYuan Zhou
First published May 27, 2022, DOI: https://doi.org/10.1212/NXG.0000000000200005
Xin Lin
From the Menzies Institute for Medical Research (X.L., P.E.M., V.S., S.S.-Y., K.P.B., B.V.T., Y.Z.), University of Tasmania, Hobart, Australia; Mater Research Institute (Y.Y.), Translational Research Institute, Brisbane, QLD, Australia; Institute for Molecular Bioscience (Y.Y.), The University of Queensland, Brisbane, QLD, Australia; School of Population and Global Health (P.E.M.), University of Western Australia, Nedlands, WA; and Neuroepidemiology Unit (S.S.-Y.), Melbourne School of Population and Global Health, The University of Melbourne, Parkville, VIC, Australia.
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  • ORCID record for Xin Lin
  • For correspondence: xin.lin@utas.edu.au
Yuanhao Yang
From the Menzies Institute for Medical Research (X.L., P.E.M., V.S., S.S.-Y., K.P.B., B.V.T., Y.Z.), University of Tasmania, Hobart, Australia; Mater Research Institute (Y.Y.), Translational Research Institute, Brisbane, QLD, Australia; Institute for Molecular Bioscience (Y.Y.), The University of Queensland, Brisbane, QLD, Australia; School of Population and Global Health (P.E.M.), University of Western Australia, Nedlands, WA; and Neuroepidemiology Unit (S.S.-Y.), Melbourne School of Population and Global Health, The University of Melbourne, Parkville, VIC, Australia.
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  • For correspondence: yuanhao.yang@mater.uq.edu.au
Phillip E. Melton
From the Menzies Institute for Medical Research (X.L., P.E.M., V.S., S.S.-Y., K.P.B., B.V.T., Y.Z.), University of Tasmania, Hobart, Australia; Mater Research Institute (Y.Y.), Translational Research Institute, Brisbane, QLD, Australia; Institute for Molecular Bioscience (Y.Y.), The University of Queensland, Brisbane, QLD, Australia; School of Population and Global Health (P.E.M.), University of Western Australia, Nedlands, WA; and Neuroepidemiology Unit (S.S.-Y.), Melbourne School of Population and Global Health, The University of Melbourne, Parkville, VIC, Australia.
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  • For correspondence: phillip.melton@utas.edu.au
Vikrant Singh
From the Menzies Institute for Medical Research (X.L., P.E.M., V.S., S.S.-Y., K.P.B., B.V.T., Y.Z.), University of Tasmania, Hobart, Australia; Mater Research Institute (Y.Y.), Translational Research Institute, Brisbane, QLD, Australia; Institute for Molecular Bioscience (Y.Y.), The University of Queensland, Brisbane, QLD, Australia; School of Population and Global Health (P.E.M.), University of Western Australia, Nedlands, WA; and Neuroepidemiology Unit (S.S.-Y.), Melbourne School of Population and Global Health, The University of Melbourne, Parkville, VIC, Australia.
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  • For correspondence: vikrant.singh@utas.edu.au
Steve Simpson-Yap
From the Menzies Institute for Medical Research (X.L., P.E.M., V.S., S.S.-Y., K.P.B., B.V.T., Y.Z.), University of Tasmania, Hobart, Australia; Mater Research Institute (Y.Y.), Translational Research Institute, Brisbane, QLD, Australia; Institute for Molecular Bioscience (Y.Y.), The University of Queensland, Brisbane, QLD, Australia; School of Population and Global Health (P.E.M.), University of Western Australia, Nedlands, WA; and Neuroepidemiology Unit (S.S.-Y.), Melbourne School of Population and Global Health, The University of Melbourne, Parkville, VIC, Australia.
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  • For correspondence: steve.simpsonyap@unimelb.edu.au
Kathryn P. Burdon
From the Menzies Institute for Medical Research (X.L., P.E.M., V.S., S.S.-Y., K.P.B., B.V.T., Y.Z.), University of Tasmania, Hobart, Australia; Mater Research Institute (Y.Y.), Translational Research Institute, Brisbane, QLD, Australia; Institute for Molecular Bioscience (Y.Y.), The University of Queensland, Brisbane, QLD, Australia; School of Population and Global Health (P.E.M.), University of Western Australia, Nedlands, WA; and Neuroepidemiology Unit (S.S.-Y.), Melbourne School of Population and Global Health, The University of Melbourne, Parkville, VIC, Australia.
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  • For correspondence: kathryn.burdon@utas.edu.au
Bruce V. Taylor
From the Menzies Institute for Medical Research (X.L., P.E.M., V.S., S.S.-Y., K.P.B., B.V.T., Y.Z.), University of Tasmania, Hobart, Australia; Mater Research Institute (Y.Y.), Translational Research Institute, Brisbane, QLD, Australia; Institute for Molecular Bioscience (Y.Y.), The University of Queensland, Brisbane, QLD, Australia; School of Population and Global Health (P.E.M.), University of Western Australia, Nedlands, WA; and Neuroepidemiology Unit (S.S.-Y.), Melbourne School of Population and Global Health, The University of Melbourne, Parkville, VIC, Australia.
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Yuan Zhou
From the Menzies Institute for Medical Research (X.L., P.E.M., V.S., S.S.-Y., K.P.B., B.V.T., Y.Z.), University of Tasmania, Hobart, Australia; Mater Research Institute (Y.Y.), Translational Research Institute, Brisbane, QLD, Australia; Institute for Molecular Bioscience (Y.Y.), The University of Queensland, Brisbane, QLD, Australia; School of Population and Global Health (P.E.M.), University of Western Australia, Nedlands, WA; and Neuroepidemiology Unit (S.S.-Y.), Melbourne School of Population and Global Health, The University of Melbourne, Parkville, VIC, Australia.
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Citation
Integrating Genetic Structural Variations and Whole-Genome Sequencing Into Clinical Neurology
Xin Lin, Yuanhao Yang, Phillip E. Melton, Vikrant Singh, Steve Simpson-Yap, Kathryn P. Burdon, Bruce V. Taylor, Yuan Zhou
Neurol Genet Aug 2022, 8 (4) e200005; DOI: 10.1212/NXG.0000000000200005

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Abstract

Advances in genome sequencing technologies have unlocked new possibilities in identifying disease-associated and causative genetic markers, which may in turn enhance disease diagnosis and improve prognostication and management strategies. With the capability of examining genetic variations ranging from single-nucleotide mutations to large structural variants, whole-genome sequencing (WGS) is an increasingly adopted approach to dissect the complex genetic architecture of neurologic diseases. There is emerging evidence for different structural variants and their roles in major neurologic and neurodevelopmental diseases. This review first describes different structural variants and their implicated roles in major neurologic and neurodevelopmental diseases, and then discusses the clinical relevance of WGS applications in neurology. Notably, WGS-based detection of structural variants has shown promising potential in enhancing diagnostic power of genetic tests in clinical settings. Ongoing WGS-based research in structural variations and quantifying mutational constraints can also yield clinical benefits by improving variant interpretation and disease diagnosis, while supporting biomarker discovery and therapeutic development. As a result, wider integration of WGS technologies into health care will likely increase diagnostic yields in difficult-to-diagnose conditions and define potential therapeutic targets or intervention points for genome-editing strategies.

Glossary

AD=
Alzheimer disease;
ALS=
amyotrophic lateral sclerosis;
ASD=
autism spectrum disorder;
CNV=
copy number variations;
FTD=
frontotemporal dementia;
GA4GH=
the Global Alliance for Genomics and Health;
L1=
long-interspersed element 1/ LINE-1;
LTR=
long terminal repeats;
MS=
multiple sclerosis;
mSVs=
mosaic SVs;
PD=
Parkinson disease;
pLoF=
predicted loss-of-function;
RNA-seq=
RNA sequencing;
STR=
short tandem repeats;
SV=
structural variants;
WES=
whole-exome sequencing;
WGS=
whole-genome sequencing

Footnotes

  • Go to Neurology.org/NG for full disclosures. Full information is provided at the end of the article.

  • The Article Processing Charge was funded by Menzies Institute for Medical Research.

  • Received February 11, 2022.
  • Accepted in final form April 14, 2022.
  • Copyright © 2022 The Author(s). Published by Wolters Kluwer Health, Inc. on behalf of the American Academy of Neurology.

This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND), which permits downloading and sharing the work provided it is properly cited. The work cannot be changed in any way or used commercially without permission from the journal.

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  • Article
    • Abstract
    • Glossary
    • Structural Variations in Neurologic and Neurodevelopmental Diseases
    • Structural Variation Detection Using Whole-Genome Sequencing
    • Whole-Genome Sequencing in Clinical Neurology
    • Towards Wider Implementation of Whole-Genome Sequencing
    • Ongoing WGS-Based Research and Future Directions
    • Conclusion
    • Study Funding
    • Disclosure
    • Appendix Authors
    • Footnotes
    • References
  • Figures & Data
  • Info & Disclosures
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