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February 2022; 8 (1) Clinical/Scientific NoteOpen Access

TNNI1 Mutated in Autosomal Dominant Proximal Arthrogryposis

Yukako Nishimori, View ORCID ProfileAritoshi Iida, Masashi Ogasawara, Mariko Okubo, Yuki Yonenobu, Makoto Kinoshita, View ORCID ProfileKazuma Sugie, View ORCID ProfileSatoru Noguchi, View ORCID ProfileIchizo Nishino
First published December 17, 2021, DOI: https://doi.org/10.1212/NXG.0000000000000649
Yukako Nishimori
From the Department of Neuromuscular Research (Y.N., M.O., M.O., S.N., I.N.), National Institute of Neuroscience, National Center of Neurology and Psychiatry (NCNP), Tokyo, Japan; Department of Clinical Genome Analysis, Medical Genome Center, NCNP, Tokyo, Japan (Y.N., A.I., I.N.); Department of Neurology (Y.N., K.S.), Nara Medical University, Nara, Japan; Department of Neurology (Y.Y., M.K.), Osaka University Graduate School of Medicine, Osaka, Japan.
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  • For correspondence: y-nishimori@ncnp.go.jp
Aritoshi Iida
From the Department of Neuromuscular Research (Y.N., M.O., M.O., S.N., I.N.), National Institute of Neuroscience, National Center of Neurology and Psychiatry (NCNP), Tokyo, Japan; Department of Clinical Genome Analysis, Medical Genome Center, NCNP, Tokyo, Japan (Y.N., A.I., I.N.); Department of Neurology (Y.N., K.S.), Nara Medical University, Nara, Japan; Department of Neurology (Y.Y., M.K.), Osaka University Graduate School of Medicine, Osaka, Japan.
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Masashi Ogasawara
From the Department of Neuromuscular Research (Y.N., M.O., M.O., S.N., I.N.), National Institute of Neuroscience, National Center of Neurology and Psychiatry (NCNP), Tokyo, Japan; Department of Clinical Genome Analysis, Medical Genome Center, NCNP, Tokyo, Japan (Y.N., A.I., I.N.); Department of Neurology (Y.N., K.S.), Nara Medical University, Nara, Japan; Department of Neurology (Y.Y., M.K.), Osaka University Graduate School of Medicine, Osaka, Japan.
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Mariko Okubo
From the Department of Neuromuscular Research (Y.N., M.O., M.O., S.N., I.N.), National Institute of Neuroscience, National Center of Neurology and Psychiatry (NCNP), Tokyo, Japan; Department of Clinical Genome Analysis, Medical Genome Center, NCNP, Tokyo, Japan (Y.N., A.I., I.N.); Department of Neurology (Y.N., K.S.), Nara Medical University, Nara, Japan; Department of Neurology (Y.Y., M.K.), Osaka University Graduate School of Medicine, Osaka, Japan.
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Yuki Yonenobu
From the Department of Neuromuscular Research (Y.N., M.O., M.O., S.N., I.N.), National Institute of Neuroscience, National Center of Neurology and Psychiatry (NCNP), Tokyo, Japan; Department of Clinical Genome Analysis, Medical Genome Center, NCNP, Tokyo, Japan (Y.N., A.I., I.N.); Department of Neurology (Y.N., K.S.), Nara Medical University, Nara, Japan; Department of Neurology (Y.Y., M.K.), Osaka University Graduate School of Medicine, Osaka, Japan.
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  • For correspondence: y.one.56@gmail.com
Makoto Kinoshita
From the Department of Neuromuscular Research (Y.N., M.O., M.O., S.N., I.N.), National Institute of Neuroscience, National Center of Neurology and Psychiatry (NCNP), Tokyo, Japan; Department of Clinical Genome Analysis, Medical Genome Center, NCNP, Tokyo, Japan (Y.N., A.I., I.N.); Department of Neurology (Y.N., K.S.), Nara Medical University, Nara, Japan; Department of Neurology (Y.Y., M.K.), Osaka University Graduate School of Medicine, Osaka, Japan.
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Kazuma Sugie
From the Department of Neuromuscular Research (Y.N., M.O., M.O., S.N., I.N.), National Institute of Neuroscience, National Center of Neurology and Psychiatry (NCNP), Tokyo, Japan; Department of Clinical Genome Analysis, Medical Genome Center, NCNP, Tokyo, Japan (Y.N., A.I., I.N.); Department of Neurology (Y.N., K.S.), Nara Medical University, Nara, Japan; Department of Neurology (Y.Y., M.K.), Osaka University Graduate School of Medicine, Osaka, Japan.
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Satoru Noguchi
From the Department of Neuromuscular Research (Y.N., M.O., M.O., S.N., I.N.), National Institute of Neuroscience, National Center of Neurology and Psychiatry (NCNP), Tokyo, Japan; Department of Clinical Genome Analysis, Medical Genome Center, NCNP, Tokyo, Japan (Y.N., A.I., I.N.); Department of Neurology (Y.N., K.S.), Nara Medical University, Nara, Japan; Department of Neurology (Y.Y., M.K.), Osaka University Graduate School of Medicine, Osaka, Japan.
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Ichizo Nishino
From the Department of Neuromuscular Research (Y.N., M.O., M.O., S.N., I.N.), National Institute of Neuroscience, National Center of Neurology and Psychiatry (NCNP), Tokyo, Japan; Department of Clinical Genome Analysis, Medical Genome Center, NCNP, Tokyo, Japan (Y.N., A.I., I.N.); Department of Neurology (Y.N., K.S.), Nara Medical University, Nara, Japan; Department of Neurology (Y.Y., M.K.), Osaka University Graduate School of Medicine, Osaka, Japan.
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Citation
TNNI1 Mutated in Autosomal Dominant Proximal Arthrogryposis
Yukako Nishimori, Aritoshi Iida, Masashi Ogasawara, Mariko Okubo, Yuki Yonenobu, Makoto Kinoshita, Kazuma Sugie, Satoru Noguchi, Ichizo Nishino
Neurol Genet Feb 2022, 8 (1) e649; DOI: 10.1212/NXG.0000000000000649

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Abstract

Objectives The main objective of this case report is to identify a gene associated with a Japanese family with autosomal dominant arthrogryposis.

Methods We performed clinicopathologic diagnosis and genomic analysis using trio-based exome sequencing.

Results A 14-year-old boy had contractures in the proximal joints, and the serum creatine kinase level was elevated. Muscle biopsy demonstrated a moth-eaten appearance in some type 1 fibers, and electron microscopic analysis revealed that type 1 fibers had Z disk streaming. We identified a heterozygous nonsense variant, c.523A>T (p.K175*), in TNNI1 in the family.

Discussion The altered amino acid residue is within the tropomyosin-binding site near the C-terminus, in a region homologous to the variational hotspot of Troponin I2 (TNNI2), which is associated with distal arthrogryposis type 1 and 2b. Compared with patients with TNNI2 variants, our patient had a milder phenotype and proximal arthrogryposis. We report here a case of proximal arthrogryposis associated with a TNNI1 nonsense variant, which expands the genetic and clinical spectrum of this disease. Further functional and genetic studies are required to clarify the role of TNNI1 in the disease.

Among the 3 troponin I genes, TNNI2, encoding fast skeletal troponin I2, and TNNI3, encoding cardiac troponin I3, were reported as causative genes of distal arthrogryposis and cardiomyopathy, respectively (HGMD Professional 2021.1). In contrast, TNNI1, encoding slow skeletal troponin I1, has not been shown to be associated with any disorders. We identified a heterozygous nonsense variant in TNNI1 by exome sequencing in a Japanese family with autosomal dominant proximal arthrogryposis.

Case Presentation

A 14-year-old boy presented with contractures of the trunk, hip, and knee joints. The family had an apparent autosomal dominant family history of joint contractures and high creatine kinase affecting the father and paternal grandfather, albeit without muscle weakness (Figure, A). The proband was born with clasped thumbs, inguinal hernia, and testicular hydrocele, which were corrected by surgery at age 5 months. At elementary school ages, he noticed difficulties with jumping, sitting with his legs crossed, and bending his back. At age 14 years, he visited the hospital seeking medical workup for contractures. On examination, his height and weight were 153 cm (−2.1 SD) and 41.4 kg (−1.5 SD), respectively. He had small mouth and trismus. He had no apparent muscle weakness but had joint contractures of the neck, trunk, and knees. The serum creatine kinase level was 1,689 IU/L (normal range: 25–170 IU/L). No edematous change or fat replacement was observed on muscle MRI. Muscle biopsy from the left biceps brachii demonstrated mild disorganization of the intermyofibrillar network, showing a moth-eaten appearance in some type 1 fibers and mild fiber size variation in the type 1 fibers. The minimum Feret diameters of type 1 fibers were marginally larger than those of type 2 fibers in patient III-2. Electron microscopic analysis revealed that type 1 fibers, identified by the Z-band width, had Z disk streaming (Figure, B).

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Figure Pedigree and Pathologic and Genetic Findings

(A) Pedigree of a Japanese arthrogryposis family. (B) Skeletal muscle pathology of patient III-2. (Upper left) NADHTR staining shows fibers with moth-eaten appearance. (Upper right) Myosin ATPase staining with pH 4.6 preincubation demonstrates type 1 fibers. Bar denotes 20 microns. (Lower left) The minimum Feret diameters of type 1 fibers were marginally larger than those of type 2 fibers in patient III-2. (Lower right) Electron microscopic analysis: Z disk streaming was observed in type 1 muscle fibers, with the average width of Z bands of the fibers with Z disk streaming at 95 nm. Bar denotes 5.0 microns. (C) (Left) Electropherograms of genomic DNAs in the family. c.523A>T was identified in patients II-1 and III-2 but not in patient III-1. (Right) Transcript with c.523A>T of TNNI1 in the patient's skeletal muscle. (D) Schematic structure of troponin I1 consists of 6 α-helices and position of the identified nonsense variant at 175. ID, inhibitory domain; RD, regulatory domain. Lysine residue at 175 in troponin I1 is highly conserved within the C-terminus. The 11 TNNI2 pathogenic variants reported in patients with distal arthrogryposis are indicated at the bottom. Tropomyosin-binding site is indicated by a rectangle. Green letters, missense; blue letters, deletion; red letters, nonsense variant.

To genetically diagnose the proband, we performed pathogenic variant screening using a custom-made targeted gene panel for inherited skeletal muscle diseases, which revealed no pathogenic variant. Trio-based exome sequencing (II-1, III-1, and III-2) identified a heterozygous nonsense variant, c.523A>T (p.K175*), in TNNI1 (NM_003281.4), which was confirmed by Sanger sequencing (Figure, C). The nonsense variant was segregated among II-1, III-1, and III-2. In addition, the reverse transcription–PCR products of mRNA from the patient's muscle showed the presence of both the mutated and normal transcripts. The altered amino acid residue (p.K175) is within the tropomyosin-binding site near the C-terminus, which is highly conserved in the troponin family and is evolutionarily conserved.1 This variant is not registered in any public databases, including gnomAD, dbSNP151, HGMD Professional 2021.1, Human Genome Variation Database, ToMMo, ClinVar, ESP6500, and 1000 Genomes.

Discussion

Troponin I is an inhibitory subunit of the troponin complex for myosin on actin binding in relaxed muscles and is important in the thin filament regulation of striated muscle contraction.1 Eleven pathogenic variants in TNNI2 have been reported in patients with distal arthrogryposis (HGMD Professional 2021.1), 10 of which were localized to the tropomyosin-binding site (Figure, D).1 The nonsense variant terminates translation at codon 175, which is also within the tropomyosin-binding site, and eliminates the last 4 amino acids at this site and the remaining 9 C-terminal amino acids. The truncated TNNI1 might lead to a dominant negative effect and impairment of the inhibitory function. The C-terminal region of troponin I (fast skeletal type) contributes to the binding affinity to tropomyosin and thin filaments to prevent myosin from accessing thin filaments without Ca2+.2 We hypothesize that the TNNI1 nonsense variant acts in a manner analogous to pathogenic variants in TNNI2, which increase the Ca2+-sensitivity of myosin-actin interaction and thus cause excessive muscle contraction.

Our patient with the nonsense variant p.K175* in TNNI1 had contractures in the proximal joints without apparent abnormality of the feet and face, whereas 10 patients with TNNI2 variants at the C-terminal region showed distal arthrogryposis type 2B, characterized by congenital contractures of the hands and feet, in addition to facial anomalies such as triangular face and downslanting palpebral fissures.3,-,7 Our patient had an apparently milder phenotype and proximal arthrogryposis. Muscle histology determined by histochemistry and electron microscopy revealed abnormalities only in type 1 fibers, possibly because TNNI1 encodes slow skeletal type troponin I. Phenotypic differences are still unclear between the patients with TNNI1 and TNNI2 variants. Further functional studies of truncated troponin I1 are necessary to prove the pathogenicity of this nonsense variant and how it leads to proximal arthrogryposis.

Study Funding

This study was supported partly by Intramural Research Grants (2-5 and 30-9) for Neurological and Psychiatric Disorders of NCNP and by AMED under Grant Number 20ek0109490h0001.

Disclosure

Y. Nishimori reports no disclosures relevant to the manuscript. A. Iida received grants from Intramural Research Grants (2-5 and 30-9) for Neurological and Psychiatric Disorders of NCNP and AMED under Grant Numbers 20ek0109490h0001 and Joint Usage and Joint Research Programs, the Institute of Advanced Medical Sciences, Tokushima University grant number 2020, 2A19. M. Ogasawara, M. Okubo, Y. Yonenobu, M. Kinoshita, and K. Sugie report no disclosures relevant to the manuscript. S. Noguchi received grants from Intramural Research Grants (2-6 and 3-9) for Neurological and Psychiatric Disorders of NCNP and AMED under Grant Number 20ek0109490h0001. I. Nishino received a grant from Intramural Research Grant (2-5) for Neurological and Psychiatric Disorders of NCNP and AMED under Grant Number 20ek0109490h0001. Go to Neurology.org/NG for full disclosures.

Appendix Authors

Table

Footnotes

  • Go to Neurology.org/NG for full disclosures. Funding information is provided at the end of the article.

  • The Article Processing Charge was funded by the authors.

  • Received June 17, 2021.
  • Accepted in final form November 10, 2021.
  • Copyright © 2021 The Author(s). Published by Wolters Kluwer Health, Inc. on behalf of the American Academy of Neurology.

This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND), which permits downloading and sharing the work provided it is properly cited. The work cannot be changed in any way or used commercially without permission from the journal.

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